STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TM52Putative SPOC domain-containing protein. (892 aa)    
Predicted Functional Partners:
A0A1W2TBR0
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.944
A0A1S7UHH9
Putative DNA-directed RNA polymerases II 24 kDa polypeptide.
    
  0.915
A0A1W2TFM6
Sister chromatid cohesion protein.
   
  
 0.912
A0A1S7UKF0
Putative RNA polymerase Rpb3 insert domain-containing protein.
    
  0.870
A0A1W2TLU0
Putative ubiquitin carboxyl-terminal hydrolase; Belongs to the peptidase C19 family.
   
 
  0.819
A0A1W2TI09
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.803
A0A1W2TKF6
Putative transcription elongation factor S-II.
    
 0.790
A0A1W2TJE6
Putative HECT-domain-containing protein.
   
    0.781
A0A1W2TCR4
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.778
A0A1S7ULJ2
Putative DNA-directed RNA polymerase II subunit RPB11.
    
 0.772
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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