STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1W2TQ20Uncharacterized protein. (583 aa)    
Predicted Functional Partners:
A0A1S7ULJ2
Putative DNA-directed RNA polymerase II subunit RPB11.
   
 0.987
A0A1S7UHH9
Putative DNA-directed RNA polymerases II 24 kDa polypeptide.
   
 0.986
A0A1W2TTT7
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.984
A0A1W2TN27
Putative DNA-directed RNA polymerase and III subunit RPABC2.
   
 0.983
A0A1W2TVU8
Putative transcription elongation factor spt-4.
   
 0.983
A0A1S7UKF0
Putative RNA polymerase Rpb3 insert domain-containing protein.
   
 0.982
A0A1S7ULU7
Putative DNA-directed RNA polymerases I II III subunit 10.
   
 0.982
A0A1W2TCR4
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.982
A0A1W2TI09
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.982
A0A1W2TPH1
Putative PHD-finger domain-containing protein.
    
 0.982
Your Current Organism:
Rosellinia necatrix
NCBI taxonomy Id: 77044
Other names: R. necatrix
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