STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_06255WGS project CABT00000000 data, contig 2.3. (832 aa)    
Predicted Functional Partners:
SMAC_05559
WGS project CABT00000000 data, contig 2.26.
  
     0.440
SMAC_09332
WGS project CABT00000000 data, contig 2.85; Belongs to the actin family.
  
 
 0.434
SMAC_06624
WGS project CABT00000000 data, contig 2.37.
  
     0.425
SMAC_06583
WGS project CABT00000000 data, contig 2.37.
  
     0.410
SMAC_04623
WGS project CABT00000000 data, contig 2.20.
  
 
  0.409
SMAC_09465
WGS project CABT00000000 data, contig 2.5.
  
     0.406
SMAC_00510
WGS project CABT00000000 data, contig 2.1.
  
 
   0.401
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.