STRINGSTRING
SMAC_04403 protein (Sordaria macrospora) - STRING interaction network
"SMAC_04403" - Hypothetical protein in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_04403Hypothetical protein (222 aa)    
Predicted Functional Partners:
SMAC_02370
Hypothetical protein (955 aa)
     
 
  0.938
SMAC_06532
Hypothetical protein; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1428 aa)
     
 
  0.938
SMAC_04470
Hypothetical protein (392 aa)
       
 
  0.903
SMAC_06245
Hypothetical protein (433 aa)
       
      0.695
SMAC_03697
Hypothetical protein (821 aa)
     
 
  0.650
SMAC_10790
Hypothetical protein (134 aa)
     
 
  0.535
SMAC_01493
Hypothetical protein (273 aa)
     
 
  0.504
SMAC_03807
Hypothetical protein (286 aa)
     
 
  0.504
SMAC_06484
Hypothetical protein (297 aa)
     
      0.502
SMAC_02489
Hypothetical protein (387 aa)
       
      0.489
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
Server load: low (9%) [HD]