STRINGSTRING
SMAC_04413 protein (Sordaria macrospora) - STRING interaction network
"SMAC_04413" - Hypothetical protein in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_04413Hypothetical protein (909 aa)    
Predicted Functional Partners:
SMAC_03929
Hypothetical protein (571 aa)
     
  0.984
SMAC_06237
Hypothetical protein; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (1325 aa)
     
  0.979
SMAC_03802
Hypothetical protein (390 aa)
     
  0.975
SMAC_06627
Hypothetical protein (352 aa)
       
  0.906
SMAC_02247
Hypothetical protein (416 aa)
       
  0.724
SMAC_05411
Hypothetical protein (364 aa)
       
  0.717
SMAC_00433
Hypothetical protein (988 aa)
     
        0.651
SMAC_08164
Hypothetical protein (68 aa)
       
 
  0.550
SMAC_00418
Hypothetical protein (313 aa)
       
      0.532
SMAC_07456
Hypothetical protein; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre- mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (1069 aa)
     
 
    0.520
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
Server load: low (8%) [HD]