STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOP9Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family. (761 aa)    
Predicted Functional Partners:
SMAC_06712
WGS project CABT00000000 data, contig 2.13.
   
   0.973
SMAC_00898
WGS project CABT00000000 data, contig 2.2.
   
 
 0.917
SMAC_03423
WGS project CABT00000000 data, contig 2.10.
   
 
 0.883
SMAC_08272
WGS project CABT00000000 data, contig 2.56.
   
   0.861
SMAC_04244
WGS project CABT00000000 data, contig 2.19.
   
  
 0.855
SMAC_08455
WGS project CABT00000000 data, contig 2.58.
   
 
 0.851
SMAC_03876
WGS project CABT00000000 data, contig 2.16.
   
 
 0.826
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
   0.826
SMAC_01097
WGS project CABT00000000 data, contig 2.2.
   
    0.820
SMAC_06302
WGS project CABT00000000 data, contig 2.34.
   
  
 0.818
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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