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SMAC_04780 protein (Sordaria macrospora) - STRING interaction network
"SMAC_04780" - UBC11 protein in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_04780UBC11 protein (124 aa)    
Predicted Functional Partners:
SMAC_07188
Hypothetical protein (482 aa)
       
  0.975
SMAC_02011
Hypothetical protein (706 aa)
     
  0.973
SMAC_02955
Hypothetical protein (519 aa)
     
  0.966
SMAC_02954
Hypothetical protein (1623 aa)
     
  0.966
SMAC_01774
Hypothetical protein (1064 aa)
     
  0.937
SMAC_00686
Hypothetical protein (1519 aa)
     
  0.924
SMAC_03355
Hypothetical protein (156 aa)
     
  0.877
SMAC_08473
Hypothetical protein (98 aa)
     
  0.857
SMAC_06263
Hypothetical protein (3992 aa)
     
  0.857
SMAC_08323
Hypothetical protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (137 aa)
       
  0.855
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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