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SMAC_12590 protein (Sordaria macrospora) - STRING interaction network
"SMAC_12590" - ubiquitin-60S ribosomal protein L40 fusion protein in Sordaria macrospora
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_12590ubiquitin-60S ribosomal protein L40 fusion protein (144 aa)    
Predicted Functional Partners:
SMAC_01898
60S ribosomal protein L32 (131 aa)
     
  0.992
SMAC_04365
60S ribosomal protein L35 (127 aa)
     
    0.992
SMAC_10240
Hypothetical protein (180 aa)
     
  0.990
SMAC_02131
60S ribosomal protein L34 (117 aa)
     
  0.990
SMAC_04642
60S ribosomal protein L20 (174 aa)
     
  0.986
SMAC_06073
ubiquitin-40S ribosomal protein S31 fusion protein (154 aa)
   
0.985
SMAC_02651
60S ribosomal protein L28 (139 aa)
     
  0.982
SMAC_02879
60S ribosomal protein L24 (156 aa)
     
  0.979
SMAC_05514
60S ribosomal protein L10 (221 aa)
     
  0.974
SMAC_02458
60S ribosomal protein L15 (203 aa)
     
  0.973
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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