STRINGSTRING
bimD protein (Sordaria macrospora) - STRING interaction network
"bimD" - PDS5/BimD/ Spo76 protein in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bimDPDS5/BimD/ Spo76 protein (1596 aa)    
Predicted Functional Partners:
scc1
MCD1/ SCC1/Rad21 protein (658 aa)
     
  0.988
SMAC_01999
SMC3 protein (1199 aa)
     
  0.976
SMAC_02911
REC8 protein (763 aa)
     
  0.973
SMAC_03947
SCC3 protein (1222 aa)
     
  0.953
SMAC_04013
SMC1 protein (1263 aa)
     
  0.952
SMAC_01734
SCC2 protein (1939 aa)
     
  0.948
SMAC_06758
Hypothetical protein (1075 aa)
     
 
  0.907
csm1
SMC4/CSM1 protein (1644 aa)
     
  0.830
SMAC_05226
SMC5 protein (1140 aa)
     
  0.829
SMAC_00874
SMC2 protein (1179 aa)
     
  0.812
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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