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SMAC_05541 protein (Sordaria macrospora) - STRING interaction network
"SMAC_05541" - Hypothetical protein in Sordaria macrospora
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_05541Hypothetical protein (415 aa)    
Predicted Functional Partners:
SMAC_05405
Hypothetical protein (641 aa)
     
  0.839
SMAC_05209
MEI9 protein (940 aa)
     
 
  0.676
SMAC_10519
Hypothetical protein (223 aa)
     
  0.637
SMAC_04277
RAD51 protein (353 aa)
       
 
  0.628
SMAC_11630
Hypothetical protein (89 aa)
       
 
  0.622
SMAC_10163
Hypothetical protein (209 aa)
       
 
  0.622
FEN1
Hypothetical protein; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (394 aa)
   
 
  0.613
SMAC_08059
Rad2 protein (1279 aa)
   
 
  0.571
SMAC_00377
Hypothetical protein (500 aa)
       
 
  0.539
NTH1
Base-excision repair protein; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (805 aa)
     
 
  0.502
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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