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SMAC_02396 protein (Sordaria macrospora) - STRING interaction network
"SMAC_02396" - 90S preribosome component RRP12 in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_0239690S preribosome component RRP12 (1264 aa)    
Predicted Functional Partners:
SMAC_06223
Hypothetical protein (820 aa)
     
 
  0.990
SMAC_08747
Hypothetical protein (1062 aa)
     
      0.990
SMAC_07100
Hypothetical protein (772 aa)
     
 
  0.989
SMAC_08272
Hypothetical protein (594 aa)
     
 
  0.984
SMAC_00089
Hypothetical protein (1776 aa)
     
 
  0.983
SMAC_01801
Hypothetical protein (1130 aa)
     
 
  0.974
SMAC_00342
Hypothetical protein (914 aa)
     
 
  0.974
SMAC_06482
Hypothetical protein (1764 aa)
     
 
  0.974
SMAC_02653
Hypothetical protein (1255 aa)
     
 
  0.973
SMAC_00898
Hypothetical protein (480 aa)
     
 
  0.973
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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