STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_00334WGS project CABT00000000 data, contig 2.1. (320 aa)    
Predicted Functional Partners:
SMAC_02484
WGS project CABT00000000 data, contig 2.3; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.973
SMAC_06065
WGS project CABT00000000 data, contig 2.32.
   
 
 0.972
SMAC_04090
37S ribosomal protein S25, mitochondrial.
   
 
 0.962
SMAC_02695
WGS project CABT00000000 data, contig 2.11.
   
 
 0.952
SMAC_08494
WGS project CABT00000000 data, contig 2.54.
   
 
 0.948
SMAC_05035
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.932
SMAC_08086
WGS project CABT00000000 data, contig 2.52.
  
 
 0.932
SMAC_00254
WGS project CABT00000000 data, contig 2.1.
   
 
 0.922
SMAC_08274
WGS project CABT00000000 data, contig 2.56.
  
 
 0.921
SMAC_00893
WGS project CABT00000000 data, contig 2.2.
   
 
 0.920
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.