STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_01277Bifunctional lycopene cyclase/phytoene synthase; Bifunctional enzyme that catalyzes the reactions from geranylgeranyl diphosphate to phytoene (phytoene synthase) and lycopene to beta-carotene via the intermediate gamma-carotene (lycopene cyclase). (602 aa)    
Predicted Functional Partners:
SMAC_01244
Putative phytoene dehydrogenase AL-1.
 
 0.997
SMAC_08723
WGS project CABT00000000 data, contig 2.64; Belongs to the FPP/GGPP synthase family.
  
 0.945
SMAC_06570
Putative farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.941
SMAC_03244
WGS project CABT00000000 data, contig 2.7; Belongs to the FPP/GGPP synthase family.
  
 0.938
SMAC_08627
WGS project CABT00000000 data, contig 2.61.
     
 0.918
SMAC_07919
WGS project CABT00000000 data, contig 2.29.
   
 
 0.881
SMAC_00934
WGS project CABT00000000 data, contig 2.2.
   
 
 0.873
SMAC_03092
WGS project CABT00000000 data, contig 2.7.
     
 0.845
SMAC_01147
WGS project CABT00000000 data, contig 2.2.
   
 
 0.834
SMAC_02778
WGS project CABT00000000 data, contig 2.12.
     
 0.828
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora k-hell, Sordaria macrospora k-hell
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