STRINGSTRING
SMAC_04973 protein (Sordaria macrospora) - STRING interaction network
"SMAC_04973" - Hypothetical protein in Sordaria macrospora
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAC_04973Hypothetical protein (250 aa)    
Predicted Functional Partners:
SMAC_02142
Hypothetical protein (1549 aa)
     
  0.996
SMAC_03445
Hypothetical protein; Binds the poly(A) tail of mRNA (754 aa)
     
  0.974
SMAC_04407
Hypothetical protein (833 aa)
     
  0.949
SMAC_07065
Hypothetical protein (357 aa)
         
0.909
SMAC_00367
Hypothetical protein (372 aa)
     
  0.892
SMAC_08294
Hypothetical protein (433 aa)
     
  0.851
SMAC_06532
Hypothetical protein; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1428 aa)
     
 
  0.846
SMAC_05283
Hypothetical protein (194 aa)
     
  0.823
PRT1
Hypothetical protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (725 aa)
     
  0.814
SMAC_01453
Hypothetical protein (517 aa)
     
  0.808
Your Current Organism:
Sordaria macrospora
NCBI taxonomy Id: 771870
Other names: S. macrospora, S. macrospora k-hell, Sordaria, Sordaria macrospora, Sordaria macrospora k hell, Sordaria macrospora k-hell
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