STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFG36042.1Putative cobalamin binding protein; PFAM: D-Lysine 5,6-aminomutase alpha subunit; B12 binding domain. (732 aa)    
Predicted Functional Partners:
AFG36041.1
D-ornithine 4,5-aminomutase S subunit.
 
 
  0.997
AFG36038.1
Hypothetical protein; PFAM: Dihydrodipicolinate reductase, N-terminus.
 
  
  0.991
AFG34905.1
Putative amino acid racemase; PFAM: Alanine racemase, N-terminal domain.
 
  
 0.973
AFG36039.1
Hypothetical protein.
 
     0.930
AFG36040.1
Cysteine synthase; PFAM: Pyridoxal-phosphate dependent enzyme.
 
     0.930
AFG36019.1
Hypothetical protein; PFAM: Hydantoinase/oxoprolinase.
 
     0.791
AFG34683.1
PFAM: D-Lysine 5,6-aminomutase alpha subunit.
 
 
 
0.747
AFG36043.1
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
       0.642
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 
 0.617
AFG35085.1
PFAM: Pterin binding enzyme; B12 binding domain; Homocysteine S-methyltransferase.
  
  
 0.613
Your Current Organism:
Fervidobacterium pennivorans
NCBI taxonomy Id: 771875
Other names: F. pennivorans DSM 9078, Fervidobacterium pennivorans DSM 9078, Fervidobacterium pennivorans str. DSM 9078, Fervidobacterium pennivorans strain DSM 9078
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.