STRINGSTRING
tgfbr-iia protein (Ciona intestinalis) - STRING interaction network
"tgfbr-iia" - Transforming growth factor beta receptor precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tgfbr-iiaTransforming growth factor beta receptor precursor (622 aa)    
Predicted Functional Partners:
nodal
Transforming growth factor beta superfamily signaling ligand precursor (415 aa)
       
  0.963
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
  0.910
tgfbr-ib
Transforming growth factor beta receptor (531 aa)
     
0.895
tgfbr-ic
TGFbeta-recepter I homologue precursor (486 aa)
     
0.881
tgfbr-ia
Transforming growth factor beta receptor precursor (423 aa)
     
0.879
ENSCING00000004894
Uncharacterized protein (387 aa)
       
  0.868
smad2/3b
Smad2/3b protein (426 aa)
     
  0.849
ENSCING00000003777
Transforming growth factor beta superfamily signaling ligand (660 aa)
       
  0.845
smad1/5
Smad1/5 protein (344 aa)
     
  0.834
ENSCING00000013600
Transforming growth factor beta superfamily signaling ligand precursor (492 aa)
       
  0.822
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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