STRINGSTRING
tkr protein (Ciona intestinalis) - STRING interaction network
"tkr" - Tachykinin receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tkrTachykinin receptor (352 aa)    
Predicted Functional Partners:
ci-vp-r
Vasopressin/oxytocin-related peptide receptor (404 aa)
         
  0.749
ENSCING00000023023
Uncharacterized protein (360 aa)
         
  0.626
ENSCING00000003738
Uncharacterized protein (366 aa)
         
  0.626
ENSCING00000002073
Uncharacterized protein (906 aa)
     
 
  0.619
ENSCING00000013958
Uncharacterized protein (737 aa)
     
 
  0.616
Cin.45524
Uncharacterized protein (159 aa)
         
  0.615
ENSCING00000011576
Uncharacterized protein (305 aa)
     
 
0.614
cioR
cioR protein (527 aa)
         
0.604
ENSCING00000007467
Uncharacterized protein (372 aa)
         
0.603
ENSCING00000019975
Uncharacterized protein (522 aa)
     
 
0.595
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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