STRINGSTRING
if-d protein (Ciona intestinalis) - STRING interaction network
"if-d" - Intermediate filament protein IF-D in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
if-dIntermediate filament protein IF-D (439 aa)    
Predicted Functional Partners:
soxB1
HMG transcription factor SoxB1 (414 aa)
     
   
  0.550
ENSCING00000019747
Uncharacterized protein (219 aa)
           
  0.518
ENSCING00000019314
Uncharacterized protein (2024 aa)
           
  0.518
ENSCING00000003654
Uncharacterized protein (415 aa)
     
   
  0.508
egfr1
Epidermal growth factor receptor precursor (1462 aa)
       
  0.488
egfr2
Uncharacterized protein (880 aa)
       
  0.488
ENSCING00000005776
Glutamine synthetase (334 aa)
           
  0.461
Cin.23358
Uncharacterized protein (256 aa)
           
  0.459
galc
Uncharacterized protein (677 aa)
           
  0.456
ENSCING00000013912
Uncharacterized protein (448 aa)
           
  0.449
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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