STRINGSTRING
isl protein (Ciona intestinalis) - STRING interaction network
"isl" - LIM homeodomain protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
islLIM homeodomain protein (402 aa)    
Predicted Functional Partners:
lhx3
LIM/homeobox protein Lhx3a type 1 (596 aa)
       
 
0.935
ENSCING00000014405
Uncharacterized protein (346 aa)
       
 
  0.882
LOC778715
Transcription factor protein (1039 aa)
     
  0.759
srf
Transcription factor protein (335 aa)
       
  0.699
pax6
Homeobox transcription factor Pax6 (497 aa)
       
 
  0.583
otx2
Otx (425 aa)
       
 
  0.570
LOC778716
Transcription factor protein (211 aa)
     
  0.560
foxq
Transcription factor protein (385 aa)
       
  0.559
foxo
Uncharacterized protein (213 aa)
       
  0.559
foxd-a/b
Transcription factor protein (610 aa)
       
  0.559
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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