STRINGSTRING
ipf1 protein (Ciona intestinalis) - STRING interaction network
"ipf1" - Transcription factor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ipf1Transcription factor (411 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
  0.901
ENSCING00000003118
Uncharacterized protein (278 aa)
       
 
  0.677
hnf1
Transcription factor protein (454 aa)
         
  0.596
foxa-b
Uncharacterized protein (235 aa)
       
  0.549
meis
Transcription factor protein (554 aa)
       
  0.518
LOC778715
Transcription factor protein (1039 aa)
       
  0.514
ptfa
Uncharacterized protein (66 aa)
     
 
  0.494
foxn2/3
Transcription factor protein (748 aa)
       
  0.461
foxL
FoxL protein (387 aa)
       
  0.458
foxm
Transcription factor protein (916 aa)
       
  0.458
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (13%) [HD]