STRINGSTRING
nfyb protein (Ciona intestinalis) - STRING interaction network
"nfyb" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfybTranscription factor protein (184 aa)    
Predicted Functional Partners:
ENSCING00000007727
Uncharacterized protein (263 aa)
     
  0.994
nfya
Uncharacterized protein (383 aa)
     
  0.993
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.982
ENSCING00000003432
Uncharacterized protein (1219 aa)
     
  0.919
ENSCING00000001161
Uncharacterized protein ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (121 aa)
     
  0.912
ENSCING00000010029
Histone H2A (141 aa)
     
  0.834
ENSCING00000005798
Histone H2A (128 aa)
     
  0.834
ENSCING00000023687
Uncharacterized protein (820 aa)
     
  0.816
ENSCING00000018211
Uncharacterized protein (169 aa)
     
  0.785
ENSCING00000000181
Uncharacterized protein (157 aa)
     
  0.785
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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