STRINGSTRING
pgm1 protein (Ciona intestinalis) - STRING interaction network
"pgm1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgm1Uncharacterized protein (560 aa)    
Predicted Functional Partners:
pygb
Phosphorylase ; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (866 aa)
   
  0.993
ENSCING00000009446
Glucose-6-phosphate isomerase (232 aa)
   
  0.968
ENSCING00000006724
Uncharacterized protein (482 aa)
     
 
  0.968
pgm2
Uncharacterized protein (611 aa)
   
  0.953
ENSCING00000007581
Uncharacterized protein (631 aa)
   
 
  0.949
ENSCING00000006080
Uncharacterized protein (252 aa)
       
  0.929
ENSCING00000003661
Glucose-6-phosphate 1-dehydrogenase ; Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis (482 aa)
   
  0.922
ENSCING00000002375
Ribose-phosphate pyrophosphokinase (342 aa)
       
  0.908
ENSCING00000000668
Uncharacterized protein (248 aa)
   
 
  0.907
ENSCING00000002805
Transaldolase ; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (329 aa)
     
  0.901
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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