STRINGSTRING
ENSCING00000001124 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000001124" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000001124Uncharacterized protein (575 aa)    
Predicted Functional Partners:
ENSCING00000005154
Uncharacterized protein (537 aa)
     
  0.990
nelfb
Uncharacterized protein (605 aa)
     
  0.938
ENSCING00000005779
Uncharacterized protein (308 aa)
     
  0.917
ncbp1
Uncharacterized protein (795 aa)
     
  0.821
spt4
SPT4 protein ; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II (122 aa)
         
  0.819
supt5h
Uncharacterized protein (1047 aa)
     
 
  0.756
ENSCING00000021895
Uncharacterized protein (286 aa)
     
    0.631
polr2b
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1183 aa)
     
 
    0.621
supt16h
Uncharacterized protein (1035 aa)
     
 
    0.621
ssrp1
FACT complex subunit SSRP1 ; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] (603 aa)
     
 
    0.620
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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