STRINGSTRING
noggin protein (Ciona intestinalis) - STRING interaction network
"noggin" - Noggin protein precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nogginNoggin protein precursor (219 aa)    
Predicted Functional Partners:
ENSCING00000003777
Transforming growth factor beta superfamily signaling ligand (660 aa)
     
  0.981
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
     
  0.914
ENSCING00000008562
Transforming growth factor beta superfamily signaling ligand precursor (385 aa)
     
  0.710
bmp3
Transforming growth factor beta superfamily signaling ligand precursor (669 aa)
     
  0.680
ENSCING00000013600
Transforming growth factor beta superfamily signaling ligand precursor (492 aa)
     
  0.671
tgfbeta2
Transforming growth factor beta superfamily signaling ligand precursor (435 aa)
     
  0.671
ENSCING00000004894
Uncharacterized protein (387 aa)
     
  0.671
admp
Transforming growth factor beta superfamily signaling ligand (546 aa)
     
  0.671
nodal
Transforming growth factor beta superfamily signaling ligand precursor (415 aa)
     
  0.671
pax6
Homeobox transcription factor Pax6 (497 aa)
           
  0.589
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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