STRINGSTRING
zf(phd)-1 protein (Ciona intestinalis) - STRING interaction network
"zf(phd)-1" - Zinc finger protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zf(phd)-1Zinc finger protein (667 aa)    
Predicted Functional Partners:
smarcc2
Uncharacterized protein (639 aa)
     
  0.843
ENSCING00000007774
Uncharacterized protein (405 aa)
     
  0.838
ENSCING00000009008
Uncharacterized protein (387 aa)
       
  0.837
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.798
ENSCING00000013288
Uncharacterized protein (435 aa)
     
  0.747
ENSCING00000014057
Uncharacterized protein (629 aa)
     
  0.694
actl6b
Uncharacterized protein (423 aa)
     
  0.685
ENSCING00000003570
Uncharacterized protein (250 aa)
     
  0.614
ENSCING00000025101
Uncharacterized protein (374 aa)
     
  0.593
ENSCING00000024239
Uncharacterized protein (764 aa)
     
  0.592
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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