STRINGSTRING
hox5 protein (Ciona intestinalis) - STRING interaction network
"hox5" - Hox 5 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hox5Hox 5 (220 aa)    
Predicted Functional Partners:
pbx
Transcription factor protein (446 aa)
       
  0.925
ENSCING00000003118
Uncharacterized protein (278 aa)
       
 
  0.688
irx-b
Transcription factor protein (570 aa)
       
  0.518
LOC778715
Transcription factor protein (1039 aa)
       
  0.514
irx-a
Transcription factor protein (567 aa)
       
  0.448
foxp
Transcription factor protein (745 aa)
       
  0.425
ci-glyr
Glycine receptor precursor (491 aa)
       
 
  0.417
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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