STRINGSTRING
dead1a protein (Ciona intestinalis) - STRING interaction network
"dead1a" - DEAD-Box Protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dead1aDEAD-Box Protein (598 aa)    
Predicted Functional Partners:
ENSCING00000008817
Uncharacterized protein (956 aa)
     
 
  0.934
ENSCING00000007995
Uncharacterized protein (779 aa)
     
      0.932
ENSCING00000009372
Uncharacterized protein (973 aa)
     
 
  0.797
ENSCING00000009356
Uncharacterized protein (836 aa)
     
 
  0.797
ENSCING00000013568
Uncharacterized protein (260 aa)
     
 
  0.770
ENSCING00000007054
Uncharacterized protein (428 aa)
     
 
  0.769
ENSCING00000003620
Uncharacterized protein ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (700 aa)
     
 
  0.745
ENSCING00000018191
Eukaryotic translation initiation factor 3 subunit G ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. This subunit can bind 18S rRNA (272 aa)
     
 
  0.716
Cin.19027
Uncharacterized protein (241 aa)
     
  0.713
ENSCING00000021937
Uncharacterized protein (333 aa)
     
 
  0.709
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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