STRINGSTRING
tr2/4 protein (Ciona intestinalis) - STRING interaction network
"tr2/4" - Nuclear receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tr2/4Nuclear receptor (692 aa)    
Predicted Functional Partners:
Cin.25686
Uncharacterized protein (373 aa)
       
  0.873
ENSCING00000021447
Uncharacterized protein (160 aa)
     
  0.664
ENSCING00000018867
Uncharacterized protein (227 aa)
     
  0.664
ENSCING00000018708
Uncharacterized protein (1528 aa)
     
  0.651
ENSCING00000009221
Uncharacterized protein (572 aa)
       
  0.634
ftzf
Nuclear receptor (504 aa)
       
 
0.594
ENSCING00000003432
Uncharacterized protein (1219 aa)
       
  0.538
ENSCING00000014942
Zinc finger protein ZF(C2H2)-80 (698 aa)
     
  0.521
ENSCING00000024784
Zinc finger protein (375 aa)
     
  0.505
ENSCING00000023665
Uncharacterized protein (521 aa)
     
  0.505
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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