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mT protein (Ciona intestinalis) - STRING interaction network
"mT" - T-box transcription factor Ci-mT in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mTT-box transcription factor Ci-mT (812 aa)    
Predicted Functional Partners:
ENSCING00000009221
Uncharacterized protein (572 aa)
       
    0.754
kat2b
Uncharacterized protein (365 aa)
       
    0.497
ENSCING00000018197
Uncharacterized protein (495 aa)
       
    0.497
kat2a
Uncharacterized protein (709 aa)
       
    0.497
ENSCING00000013561
Transcription factor protein (301 aa)
     
 
  0.475
nkx-a
Uncharacterized protein (291 aa)
     
 
  0.475
pax6
Homeobox transcription factor Pax6 (497 aa)
     
 
  0.475
pax3/7
Uncharacterized protein (673 aa)
     
 
  0.475
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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