STRINGSTRING
smu1 protein (Ciona intestinalis) - STRING interaction network
"smu1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smu1Uncharacterized protein (513 aa)    
Predicted Functional Partners:
ENSCING00000005598
Uncharacterized protein (527 aa)
     
 
  0.980
ENSCING00000022897
Uncharacterized protein (526 aa)
     
      0.563
yb1/2/3
Y-box protein 1/2/3 (320 aa)
     
      0.562
ENSCING00000003322
Uncharacterized protein (162 aa)
       
      0.561
ENSCING00000005314
Uncharacterized protein (501 aa)
   
 
    0.502
ENSCING00000008697
Uncharacterized protein (1020 aa)
       
      0.493
ENSCING00000003297
Uncharacterized protein (140 aa)
       
      0.493
aptx
Aprataxin ; DNA-binding protein involved in single-strand DNA break repair, double-strand DNA break repair and base excision repair. Resolves abortive DNA ligation intermediates formed either at base excision sites, or when DNA ligases attempt to repair non- ligatable breaks induced by reactive oxygen species. Catalyzes the release of adenylate groups covalently linked to 5’-phosphate termini, resulting in the production of 5’-phosphate termini that can be efficiently rejoined (By similarity) (380 aa)
     
   
  0.472
ENSCING00000003743
Uncharacterized protein ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (326 aa)
   
 
    0.469
ENSCING00000024086
Uncharacterized protein (186 aa)
   
   
    0.460
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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