STRINGSTRING
rxr protein (Ciona intestinalis) - STRING interaction network
"rxr" - Nuclear receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rxrNuclear receptor (507 aa)    
Predicted Functional Partners:
lxr
Uncharacterized protein (557 aa)
       
0.978
nr1
Nuclear receptor 1 (587 aa)
       
 
0.964
Cin.25686
Uncharacterized protein (373 aa)
       
  0.873
vdr-a
Nuclear receptor (532 aa)
       
0.862
nr41/42/43
Nuclear receptor (1053 aa)
       
0.689
Cin.52569
Histone deacetylase (404 aa)
       
  0.673
ENSCING00000002360
Histone deacetylase (430 aa)
       
  0.673
ENSCING00000018708
Uncharacterized protein (1528 aa)
       
  0.651
ENSCING00000009221
Uncharacterized protein (572 aa)
       
  0.634
fxr
Nuclear receptor (294 aa)
       
0.623
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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