STRINGSTRING
tcf/lef protein (Ciona intestinalis) - STRING interaction network
"tcf/lef" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcf/lefTranscription factor protein (351 aa)    
Predicted Functional Partners:
nemo-like
Nemo-Like kinase (403 aa)
       
  0.995
ENSCING00000007020
Uncharacterized protein (273 aa)
       
  0.994
cbp
Uncharacterized protein (1533 aa)
     
  0.982
CTNNB1
Beta-catenin (497 aa)
       
  0.971
groucho1
Groucho (847 aa)
       
  0.971
groucho2
Groucho (835 aa)
       
  0.969
ctbp1
Uncharacterized protein (442 aa)
       
  0.947
ENSCING00000003622
Uridine kinase (505 aa)
       
  0.943
ENSCING00000002560
Uncharacterized protein (232 aa)
       
  0.943
ENSCING00000004824
Uncharacterized protein (456 aa)
     
  0.919
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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