STRINGSTRING
csd protein (Ciona intestinalis) - STRING interaction network
"csd" - Cysteine sulfinic acid decarboxylase in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csdCysteine sulfinic acid decarboxylase (488 aa)    
Predicted Functional Partners:
ENSCING00000017909
Uncharacterized protein (244 aa)
     
 
  0.922
ENSCING00000001911
Uncharacterized protein (614 aa)
     
 
  0.922
ENSCING00000000540
Uncharacterized protein (560 aa)
     
 
  0.922
ENSCING00000012704
Uncharacterized protein (154 aa)
     
 
  0.903
ENSCING00000008189
Uncharacterized protein (417 aa)
   
 
    0.900
vgat
Vesicular GABA transporter (637 aa)
     
  0.829
ENSCING00000003669
Aspartate aminotransferase (425 aa)
     
 
  0.806
ENSCING00000008364
Aspartate aminotransferase (415 aa)
         
  0.806
gad
Glutamate decarboxylase 1 (531 aa)
   
   
 
0.806
ENSCING00000002644
Uncharacterized protein (470 aa)
 
  0.759
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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