STRINGSTRING
pf-rib protein (Ciona intestinalis) - STRING interaction network
"pf-rib" - Protofilament ribbon protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pf-ribProtofilament ribbon protein (379 aa)    
Predicted Functional Partners:
ciaxp66.0
Axonemal p66.0 (575 aa)
     
   
  0.646
ic5
DC2-related axonemal dynein intermediate chain 5 (548 aa)
     
   
  0.646
ENSCING00000002033
Uncharacterized protein (552 aa)
     
   
  0.581
Cin.28535
Uncharacterized protein (419 aa)
     
   
  0.565
tekt3
Uncharacterized protein (494 aa)
     
   
  0.522
tektinB1
Tektin B1 (435 aa)
     
   
  0.522
tektinA1
Tektin A1 (447 aa)
     
   
  0.522
ENSCING00000002772
Uncharacterized protein (402 aa)
     
   
  0.522
ENSCING00000005883
Uncharacterized protein (411 aa)
           
  0.481
ENSCING00000004071
Uncharacterized protein (652 aa)
     
   
  0.478
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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