STRINGSTRING
elk protein (Ciona intestinalis) - STRING interaction network
"elk" - Elk protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elkElk protein (946 aa)    
Predicted Functional Partners:
srf
Transcription factor protein (335 aa)
       
  0.751
ENSCING00000002253
Uncharacterized protein (432 aa)
       
 
  0.690
erk5
Mitogen-activated protein kinase (820 aa)
       
  0.606
erk1/2
Mitogen-activated protein kinase (350 aa)
       
  0.606
ENSCING00000001478
Uncharacterized protein (364 aa)
       
  0.606
erk3/4
Mitogen-activated protein kinase (906 aa)
       
  0.606
foxL
FoxL protein (387 aa)
       
  0.574
ENSCING00000021010
Uncharacterized protein (374 aa)
     
  0.528
ENSCING00000022137
Zinc finger protein Ci-ZF(C2H2)-42 (597 aa)
       
  0.475
LOC778715
Transcription factor protein (1039 aa)
     
  0.458
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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