STRINGSTRING
tef/hlf protein (Ciona intestinalis) - STRING interaction network
"tef/hlf" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tef/hlfTranscription factor protein (393 aa)    
Predicted Functional Partners:
atf4/5
Transcription factor protein (340 aa)
       
 
  0.647
nf-il2
Transcription factor protein (585 aa)
       
 
  0.541
erk5
Mitogen-activated protein kinase (820 aa)
       
  0.443
erk1/2
Mitogen-activated protein kinase (350 aa)
       
  0.443
ENSCING00000001478
Uncharacterized protein (364 aa)
       
  0.443
erk3/4
Mitogen-activated protein kinase (906 aa)
       
  0.443
ENSCING00000024111
Uncharacterized protein (315 aa)
       
  0.417
ENSCING00000020815
Uncharacterized protein (347 aa)
       
  0.417
ENSCING00000012574
Uncharacterized protein (171 aa)
       
  0.417
ENSCING00000007605
Uncharacterized protein (381 aa)
       
  0.417
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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