STRINGSTRING
ctm1 protein (Ciona intestinalis) - STRING interaction network
"ctm1" - Tropomyosin, smooth muscle/fibroblast CTM1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctm1Tropomyosin, smooth muscle/fibroblast CTM1 ; The function of tropomyosin in smooth muscle and non- muscle cells is not clear (284 aa)    
Predicted Functional Partners:
ENSCING00000007550
Uncharacterized protein (378 aa)
     
  0.982
ENSCING00000007153
Uncharacterized protein (378 aa)
     
  0.982
act
Act protein (375 aa)
     
  0.977
ENSCING00000000848
Uncharacterized protein (377 aa)
     
  0.969
actn2
Uncharacterized protein (927 aa)
     
  0.949
tni
Troponin I (225 aa)
     
  0.930
myh7
Uncharacterized protein (1933 aa)
     
  0.904
ENSCING00000020363
Uncharacterized protein (1972 aa)
     
  0.904
ENSCING00000023791
Uncharacterized protein (1927 aa)
     
  0.904
ENSCING00000021245
Uncharacterized protein (714 aa)
     
  0.904
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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