STRINGSTRING
ENSCING00000002360 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000002360" - Histone deacetylase in Ciona intestinalis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000002360Histone deacetylase (430 aa)    
Predicted Functional Partners:
ENSCING00000009117
Uncharacterized protein (1237 aa)
     
  0.983
rbbp4
Uncharacterized protein (431 aa)
     
  0.981
ENSCING00000009221
Uncharacterized protein (572 aa)
     
  0.971
Cin.11699
Uncharacterized protein (172 aa)
     
  0.957
ENSCING00000001161
Uncharacterized protein ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (121 aa)
     
  0.955
ENSCING00000004590
Uncharacterized protein (1101 aa)
     
  0.952
ENSCING00000019847
Zinc finger protein LOC723799 (1298 aa)
     
  0.947
ENSCING00000022359
Histone H3 (136 aa)
   
  0.945
ENSCING00000002753
Histone H3 (136 aa)
   
  0.945
ENSCING00000008243
Uncharacterized protein ; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (1009 aa)
     
0.943
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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