STRINGSTRING
vachtp protein (Ciona intestinalis) - STRING interaction network
"vachtp" - Vesicular acetylcholine transporter in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vachtpVesicular acetylcholine transporter (657 aa)    
Predicted Functional Partners:
ciarr
Arrestin (253 aa)
         
  0.659
ENSCING00000005999
Uncharacterized protein (615 aa)
     
 
  0.627
ENSCING00000009005
Uncharacterized protein (564 aa)
     
 
    0.620
ENSCING00000007520
Uncharacterized protein (909 aa)
     
 
    0.619
ENSCING00000015685
Synaptosomal-associated protein (160 aa)
     
 
  0.607
chat
Choline acetyltransferase (759 aa)
     
   
  0.600
ENSCING00000022491
Uncharacterized protein (126 aa)
         
  0.597
ENSCING00000007685
Uncharacterized protein (456 aa)
     
 
    0.585
ENSCING00000003264
Uncharacterized protein (486 aa)
     
 
    0.585
syt1
Synaptotagmin (328 aa)
     
 
  0.562
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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