STRINGSTRING
thbsb protein (Ciona intestinalis) - STRING interaction network
"thbsb" - Thrombospondin Bii precursor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thbsbThrombospondin Bii precursor (973 aa)    
Predicted Functional Partners:
Cin.24917
Uncharacterized protein (257 aa)
       
  0.819
LOC619278
Thrombospondin A precursor (1166 aa)
       
0.809
ENSCING00000017149
Uncharacterized protein (84 aa)
         
    0.800
ENSCING00000003358
Uncharacterized protein (393 aa)
         
    0.800
ENSCING00000019181
Uncharacterized protein (609 aa)
     
 
  0.627
ENSCING00000005940
Uncharacterized protein (435 aa)
       
  0.621
ENSCING00000018153
Uncharacterized protein (2970 aa)
       
  0.621
ENSCING00000008697
Uncharacterized protein (1020 aa)
     
  0.613
ENSCING00000009362
Integrin beta (827 aa)
     
  0.561
ENSCING00000006316
Integrin beta (828 aa)
     
  0.561
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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