STRINGSTRING
selo protein (Ciona intestinalis) - STRING interaction network
"selo" - Selenoprotein O in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
seloSelenoprotein O (637 aa)    
Predicted Functional Partners:
selk
Selenoprotein K (89 aa)
           
  0.726
sepn1
Selenoprotein N, 1 (463 aa)
           
  0.632
txnrd3
Thioredoxin reductase 3 (596 aa)
   
   
  0.607
sels
Selenoprotein S (202 aa)
           
  0.504
ENSCING00000016996
Uncharacterized protein (452 aa)
           
  0.472
ENSCING00000013620
Uncharacterized protein (157 aa)
   
   
  0.464
ENSCING00000008384
Uncharacterized protein (380 aa)
           
  0.450
ENSCING00000022997
Uncharacterized protein (302 aa)
     
   
  0.435
ENSCING00000017984
Uncharacterized protein (377 aa)
           
  0.420
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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