STRINGSTRING
ENSCING00000002961 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000002961" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000002961Uncharacterized protein (644 aa)    
Predicted Functional Partners:
ENSCING00000003319
Zinc finger protein (349 aa)
     
    0.781
ENSCING00000001798
Uncharacterized protein (365 aa)
     
    0.726
ENSCING00000007375
Uncharacterized protein (235 aa)
     
    0.688
ENSCING00000000257
Uncharacterized protein (167 aa)
     
    0.688
ENSCING00000005564
Zinc finger protein ZF(CCHC)-13 (494 aa)
     
    0.682
ENSCING00000002337
Uncharacterized protein (375 aa)
     
    0.681
ENSCING00000004845
Peptidyl-prolyl cis-trans isomerase ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (159 aa)
       
    0.676
ENSCING00000016737
Uncharacterized protein (308 aa)
     
    0.665
ENSCING00000003877
Uncharacterized protein (365 aa)
     
    0.665
U1C
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (122 aa)
       
    0.642
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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