STRINGSTRING
arfgap-10 protein (Ciona intestinalis) - STRING interaction network
"arfgap-10" - Arf GTPase activating protein 10 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arfgap-10Arf GTPase activating protein 10 (563 aa)    
Predicted Functional Partners:
ENSCING00000007307
Uncharacterized protein (590 aa)
     
  0.943
ENSCING00000020132
Uncharacterized protein (84 aa)
     
0.936
ENSCING00000014763
Uncharacterized protein (202 aa)
 
 
  0.908
ENSCING00000006169
Uncharacterized protein (932 aa)
     
  0.907
copa
Uncharacterized protein ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1225 aa)
     
  0.902
ENSCING00000002213
Coatomer subunit beta ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (965 aa)
     
  0.901
ENSCING00000020806
Uncharacterized protein (183 aa)
     
  0.847
ENSCING00000021790
Uncharacterized protein (182 aa)
     
  0.847
ENSCING00000004846
Uncharacterized protein (180 aa)
     
  0.847
ENSCING00000023521
Uncharacterized protein (102 aa)
       
  0.814
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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