STRINGSTRING
ci-btf3 protein (Ciona intestinalis) - STRING interaction network
"ci-btf3" - Basic transcription factor 3 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ci-btf3Basic transcription factor 3 (158 aa)    
Predicted Functional Partners:
ENSCING00000001952
Uncharacterized protein (206 aa)
     
  0.999
ENSCING00000014452
Uncharacterized protein (106 aa)
     
        0.960
ENSCING00000003124
Uncharacterized protein (554 aa)
       
      0.874
ENSCING00000011538
Uncharacterized protein (125 aa)
     
 
  0.813
ENSCING00000010423
Uncharacterized protein (112 aa)
     
        0.807
ENSCING00000011581
Uncharacterized protein (160 aa)
     
        0.804
ENSCING00000006306
40S ribosomal protein S8 (205 aa)
     
      0.801
ENSCING00000020198
Uncharacterized protein (133 aa)
     
        0.794
ENSCING00000003326
Uncharacterized protein (178 aa)
     
      0.789
rs23
40S ribosomal protein S23 (143 aa)
     
        0.789
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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