STRINGSTRING
nedd4l protein (Ciona intestinalis) - STRING interaction network
"nedd4l" - E3 ubiquitin-protein ligase in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nedd4lE3 ubiquitin-protein ligase (871 aa)    
Predicted Functional Partners:
r27a
R27a protein (155 aa)
       
  0.945
ENSCING00000018711
Uncharacterized protein (148 aa)
     
  0.939
ENSCING00000007996
E3 ubiquitin-protein ligase (752 aa)
     
0.904
ENSCING00000014835
E3 ubiquitin-protein ligase (910 aa)
     
0.897
ENSCING00000002281
scalloped/TEF1 protein (350 aa)
       
  0.858
ENSCING00000019408
Uncharacterized protein (85 aa)
       
  0.858
ENSCING00000003861
Uncharacterized protein (148 aa)
     
  0.854
smad2/3b
Smad2/3b protein (426 aa)
       
  0.852
smad4
Smad4 protein (527 aa)
     
  0.851
smad2/3a
Smad2/3a protein (446 aa)
       
  0.851
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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