STRINGSTRING
atrx protein (Ciona intestinalis) - STRING interaction network
"atrx" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atrxUncharacterized protein (1087 aa)    
Predicted Functional Partners:
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
     
  0.885
ENSCING00000014739
Uncharacterized protein (181 aa)
     
      0.842
actn2
Uncharacterized protein (927 aa)
     
 
  0.842
ENSCING00000003432
Uncharacterized protein (1219 aa)
     
  0.840
ENSCING00000001150
Uncharacterized protein (602 aa)
     
      0.836
ENSCING00000022233
Uncharacterized protein (107 aa)
       
      0.830
ENSCING00000004712
Uncharacterized protein (390 aa)
       
      0.830
pax6
Homeobox transcription factor Pax6 (497 aa)
       
      0.829
ENSCING00000001999
Uncharacterized protein (473 aa)
     
 
  0.807
smarcc2
Uncharacterized protein (639 aa)
     
  0.788
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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