STRINGSTRING
nckap1 protein (Ciona intestinalis) - STRING interaction network
"nckap1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nckap1Uncharacterized protein (1138 aa)    
Predicted Functional Partners:
ENSCING00000009273
Uncharacterized protein (985 aa)
     
  0.994
ENSCING00000017068
Uncharacterized protein (142 aa)
     
  0.993
ENSCING00000020566
Uncharacterized protein (88 aa)
     
  0.987
ENSCING00000014183
Uncharacterized protein (204 aa)
     
  0.986
ENSCING00000007947
Uncharacterized protein (428 aa)
     
  0.880
ENSCING00000012655
Uncharacterized protein (441 aa)
     
  0.830
rcl1
Rac and Cdc42-like 1 protein (194 aa)
     
  0.806
LOC445702
Rac1 protein (192 aa)
     
  0.806
ar20
Ar20 protein ; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament (168 aa)
       
  0.801
ENSCING00000025000
Uncharacterized protein (216 aa)
       
  0.787
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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