STRINGSTRING
hdcl protein (Ciona intestinalis) - STRING interaction network
"hdcl" - Histidine decarboxylase-like protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdclHistidine decarboxylase-like protein (492 aa)    
Predicted Functional Partners:
th
Tyrosine 3-monooxygenase (429 aa)
     
  0.965
ENSCING00000006533
Uncharacterized protein (305 aa)
     
  0.965
ENSCING00000003462
Tryptophan hydroxylase (448 aa)
     
  0.965
ENSCING00000000574
Uncharacterized protein (512 aa)
     
 
  0.964
Cin.53818
Uncharacterized protein (118 aa)
     
 
  0.911
ENSCING00000016000
Uncharacterized protein (263 aa)
         
  0.909
ENSCING00000002670
Uncharacterized protein (268 aa)
         
  0.909
ENSCING00000008364
Aspartate aminotransferase (415 aa)
     
 
  0.908
ENSCING00000003669
Aspartate aminotransferase (425 aa)
     
 
  0.908
ENSCING00000000311
Uncharacterized protein (415 aa)
   
 
  0.907
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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