STRINGSTRING
vps13d protein (Ciona intestinalis) - STRING interaction network
"vps13d" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps13dUncharacterized protein (789 aa)    
Predicted Functional Partners:
ENSCING00000021728
Uncharacterized protein (301 aa)
 
            0.557
ENSCING00000006234
Uncharacterized protein (305 aa)
           
  0.487
ENSCING00000019204
Uncharacterized protein (257 aa)
 
            0.463
ENSCING00000016470
Uncharacterized protein (607 aa)
     
 
  0.454
ENSCING00000006088
Uncharacterized protein (688 aa)
     
 
  0.454
cipc2
Similar to putative prohormone convertase 2 (660 aa)
     
 
  0.454
pcsk5
Uncharacterized protein (608 aa)
     
 
  0.454
ENSCING00000023877
Uncharacterized protein (187 aa)
     
   
  0.438
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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