STRINGSTRING
clp1 protein (Ciona intestinalis) - STRING interaction network
"clp1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clp1Uncharacterized protein ; Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3’-end formation (430 aa)    
Predicted Functional Partners:
ENSCING00000021080
Uncharacterized protein (262 aa)
     
  0.966
ENSCING00000020318
Ziinc finger protein Ci-ZF(C3H)-7 (977 aa)
     
  0.950
ENSCING00000006401
Uncharacterized protein (724 aa)
     
  0.950
ENSCING00000000514
Uncharacterized protein (1354 aa)
     
  0.941
cpsf3
Uncharacterized protein (695 aa)
     
  0.936
ENSCING00000017649
Uncharacterized protein (486 aa)
     
  0.935
ENSCING00000007331
Uncharacterized protein (563 aa)
       
  0.924
Cin.31589
Uncharacterized protein (222 aa)
       
  0.924
ENSCING00000002398
Uncharacterized protein (605 aa)
     
  0.922
ENSCING00000003327
Zinc finger protein 55 (858 aa)
     
  0.900
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (12%) [HD]